PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491303.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SRS
Protein Properties Length: 418aa    MW: 44185.7 Da    PI: 9.2401
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491303.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.23.6e-671923543154
          DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaes 96 
                      gt++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrer +++a+++  a  s+ +++ +k++r   s++++++s+t++s++++
  XP_004491303.2 192 GGTTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLATAATTTVVAGGSSgSTSGAKKPRLIASQQTTTTSHTSTSNTTP 286
                     5789**********************************************9999998888777665889999****9****************** PP

          DUF702  97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                     +++++t s          +P +v+++avf+cvrv+svddg++e+aYq++v+igGhvfkG+Lyd+G+e+
  XP_004491303.2 287 PRSFDTGSshqdasfkesMPGQVRAPAVFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVEN 354
                     *****99999*******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.6E-61194353IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016236.5E-27196238IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-28305352IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
INYKKKKKLF VVATTRRLPS DSGAFADWAA TSSSAARTTA APEELSLGFN AGPTAGPSTG  60
PTTGVWSRSS INYGVATPEM GMFVVAPSFH HHHESLLSDP HSLNPATALG VGVIPLLTTS  120
PCHLDNESNM LNNRRQQQGI QFWHEQHHQQ QQQQGSHHHY LKKQSFLDHN TSPTNLIHGG  180
GGLTGSGTSS GGGTTTCQDC GNQAKKDCTN RRCRTCCKSR GFDCPTHVKS TWVPAARRRE  240
RLATAATTTV VAGGSSGSTS GAKKPRLIAS QQTTTTSHTS TSNTTPPRSF DTGSSHQDAS  300
FKESMPGQVR APAVFKCVRV TSVDDGKDEY AYQAVVKIGG HVFKGFLYDH GVENNNNNKE  360
VYPNLSELHL GGGNRNGVSS SSPMMDPSHD VYAAASSAGG GGGGLLGGHG SAYGNQIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9621261e-154CR962126.2 Medicago truncatula chromosome 5 clone mth2-143k7, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491303.20.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like, partial
SwissprotQ94CK93e-84LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLG7K3571e-170G7K357_MEDTR; Lateral root primordium (LRP)-like protein
STRINGGLYMA02G44860.21e-133(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65043351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.42e-72Lateral root primordium (LRP) protein-related